205r104c是不是hg20580 hg20585r104

来源：蜘蛛抓取(WebSpider) 时间：2016-06-03 01:43 标签： hg20580 hg20585
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Join Legend
Serious alignment problem, requires review.
Zero, or more than one, overlaps
Half dove-tail &50 bp
Alignment identity &98%
Alignment length &50 bp
&2 gaps, each gap &25 bp, not marked as an SSR
&0 gaps, each gap &50 bp, not marked as an SSR
&0 gaps, each gap &500 bp, not marked as an SSR
&0 gaps, each gap &500 bp, marked as an SSR
Minor alignment problem.
Exactly one overlap
Half dove-tail &0 bp and <=50bp
Alignment identity &99.1%
Alignment length &2000 bp
&0 gaps, each gap &25 bp, not marked as an SSR
&0 gaps, each gap &50 bp, not marked as an SSR
&0 gaps, each gap &500 bp, not marked as an SSR
&0 gaps, each gap &500 bp, marked as an SSR
Excellent alignment, meets all defined criteria.
Exactly one RuleInfo
Half dove-tail &=0 bp
Alignment identity &=99.1%
Alignment length &=2000 bp
&=0 gaps, each gap &25 bp, not marked as an SSR
&=0 gaps, each gap &50 bp, not marked as an SSR
&=0 gaps, each gap &500 bp, not marked as an SSR
&=0 gaps, each gap &500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.
Curator Links
Alignment for AC and AC
TypePoint1Point2Orient1Orient2CuratorCommentTimeIdAlignmentReleases
Switch Points
A127755-+chenhcTaxid 10090 chrom 17 Primary assembly 17:00:39.9436729319234GRCm38, MGSCv37
AC : - : 27754..1
AC : + : 1..27754
Mismatches = 0, Gaps = 0, Length = 27754
Percent identity = 100%
Score = 5.502e+04 bits (27754), Expect = 0
2 BAC and 18 Fosmid bridging clones.
2 BAC and 18 Fosmid concordant clones.
0 BAC and 0 Fosmid discordant clones.
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.................................. 27754
IdTypeDateWhodidComment
29065InitHasAlign12/01/:00f_old_db
178050CreateSwitchPt11/20/:39chenhctpf_builder 1.6
Toolkit wrapper version: built Nov 19 2008 using /netopt/ncbi_tools64/c++.by-date//GCC401-Release64/lib
Accession%idPosition (strand) Accession%idPosition (strand)
C3H-101G6&AC99%pos 100911 (F+) C3H-178G15AC99.27%pos 98550 (R+) &AC99.36%pos 98665 (R+) &C3H-198O14AC99.3%pos 15041 (R+) &AC99.3%pos 12714 (R-) &C3H-199L1AC99.15%pos 168881 (R+) &C3H-207B16AC99.37%pos 71233 (R-) AC99.49%pos 44443 (F-) CH29-100I21&AC99.02%pos 32585 (F+) CH29-115B9&AC99.13%pos 118820 (F+) CH29-171L7&AC99.64%pos 147708 (F-) CH29-486J7AC99.05%pos 39567 (R+) &CH29-515G11AC99.51%pos 88432 (R-) &CH29-563B23AC99.14%pos 129600 (R-) &CH29-586D14AC99.28%pos 15757 (R-) &AC99.28%pos 11998 (R+) &CH29-613C23AC99.62%pos 27779 (R+) &RP23-28O13&AC99.3%pos 88462 (F+) RP24-104A20AC99.35%pos 62434 (R-) &RP24-129G20AC99.32%pos 173916 (R-) &RP24-179J6AC100%pos 54294 (R-) AC99.11%pos 111028 (F-) RP24-208A11&AC99.38%pos 107523 (F+) RP24-241C18&AC99.42%pos 167286 (F+) RP24-293N20&AC99.1%pos 114257 (F-) RP24-342F10&AC99.83%pos 138161 (F+) RP24-344O6AC100%pos 117365 (R+) &RP24-400M20AC99.58%pos 155327 (R+) &RP24-72O20AC99.64%pos 49311 (R-) &
Fosmid Ends
Accession%idPosition (strand) Accession%idPosition (strand)
WI1-1132P13AC99.82%pos 154035 (R-) AC100%pos 117513 (F+) WI1-1164D18AC100%pos 26226 (R-) AC100%pos 40990 (F-) AC100%pos 1529 (R+) &WI1-1164F20AC100%pos 26226 (R-) AC100%pos 40984 (F-) AC100%pos 1529 (R+) &WI1-1242C20AC99.06%pos 48214 (R-) &WI1-130F3AC100%pos 1995 (R+) AC100%pos 40901 (F-) AC100%pos 25760 (R-) &WI1-131L24&AC99.18%pos 168943 (F+) WI1-1411J5AC99.85%pos 81305 (R-) AC99.8%pos 37124 (F+) WI1-1463K2AC99.67%pos 70882 (R-) &WI1-1528B10AC100%pos 85209 (R-) AC99.09%pos 41022 (F+) WI1-1549E24AC100%pos 150375 (R-) AC100%pos 109816 (F+) WI1-1690J4&AC99.67%pos 80652 (F+) WI1-1720A17AC100%pos 48150 (R+) AC99.5%pos 87189 (F-) WI1-1741C7AC100%pos 83996 (R-) AC100%pos 46080 (F+) WI1-1744N20AC99.13%pos 60067 (R-) AC99.3%pos 6891 (F-) &AC99.3%pos 20864 (F+) WI1-1746I1&AC100%pos 56184 (F+) WI1-1839K4AC99.8%pos 127254 (R-) AC100%pos 84531 (F+) WI1-1874E16AC100%pos 28330 (R-) AC100%pos 37180 (F-) WI1-1896I12AC100%pos 152101 (R+) &WI1-2004P3AC99.44%pos 120293 (R+) AC99.79%pos 158938 (F-) WI1-2005J23AC99.25%pos 31013 (R-) AC99.42%pos 40070 (F-) WI1-2073K8AC100%pos 95699 (R+) AC99.77%pos 134990 (F-) WI1-2085B19AC99.8%pos 66315 (R+) &WI1-2167H21&AC100%pos 49932 (F-) WI1-2201M1AC99.71%pos 35040 (R-) AC99.81%pos 35288 (F-) WI1-2205P9AC99.56%pos 262 (R+) AC99.74%pos 37966 (F-) AC99.56%pos 27493 (R-) &WI1-2218P19AC99.66%pos 6975 (R+) AC100%pos 45222 (F-) AC99.66%pos 20780 (R-) &WI1-2228J8&AC99.35%pos 105287 (F-) WI1-2284H9&AC100%pos 97228 (F+) WI1-2288A19&AC100%pos 151177 (F+) WI1-2340I17AC100%pos 30282 (R-) AC100%pos 33437 (F-) WI1-2344C1AC100%pos 121813 (R-) &WI1-2382O17AC99.03%pos 153386 (R+) &WI1-23H20AC100%pos 137598 (R-) AC100%pos 100757 (F+) WI1-2420G3AC100%pos 26487 (R-) AC100%pos 39319 (F-) AC100%pos 1268 (R+) &WI1-2427C14AC100%pos 129720 (R+) AC99.75%pos 169244 (F-) WI1-2518P2AC100%pos 66122 (R-) AC99.21%pos 28490 (F+) WI1-2571E12AC100%pos 29409 (R-) &WI1-2593H4AC99.48%pos 7790 (R-) AC100%pos 62627 (F-) AC99.48%pos 19965 (R+) &WI1-2593P4AC99.22%pos 19960 (R+) AC99.43%pos 62636 (F-) AC99.22%pos 7795 (R-) &WI1-2659I22AC100%pos 120525 (R+) AC99.57%pos 156291 (F-) WI1-2695P7AC99.52%pos 54736 (R-) AC100%pos 15496 (F+) &AC100%pos 12259 (F-) WI1-2705I23&AC100%pos 166080 (F+) WI1-2730L3AC99.17%pos 160357 (R-) AC99.73%pos 118296 (F+) WI1-2765K17AC100%pos 160366 (R-) AC99.82%pos 118295 (F+) WI1-2779A6AC99.54%pos 282 (R+) AC99.49%pos 37071 (F-) AC99.54%pos 27473 (R-) &WI1-2791A13AC99.28%pos 125691 (R-) AC99.83%pos 86940 (F+) WI1-2791E11AC100%pos 125691 (R-) AC100%pos 86949 (F+) WI1-2791O15&AC100%pos 86949 (F+) WI1-2826D3AC100%pos 108106 (R+) AC99.34%pos 148877 (F-) WI1-2854K1&AC100%pos 23668 (F-) &AC100%pos 4087 (F+) WI1-2872J20AC99.79%pos 158831 (R-) AC100%pos 118931 (F+) WI1-287G15AC99.82%pos 160446 (R+) &WI1-36G12AC99.4%pos 156098 (R-) AC100%pos 111274 (F+) WI1-376O8&AC99.71%pos 114264 (F-) WI1-3H6AC100%pos 112525 (R+) AC100%pos 150062 (F-) WI1-454M7AC99.58%pos 99637 (R-) AC100%pos 60343 (F+) WI1-482E17AC100%pos 127168 (R+) &WI1-484K11&AC100%pos 144237 (F+) WI1-486M23AC100%pos 100608 (R-) &WI1-566B16&AC99.3%pos 43740 (F-) WI1-617K4&AC100%pos 149064 (F+) WI1-66H13AC100%pos 128013 (R-) AC100%pos 91161 (F+) WI1-80P19AC99.47%pos 173940 (R-) AC100%pos 133196 (F+) WI1-810B6AC99.7%pos 114876 (R-) &WI1-845K5AC100%pos 85209 (R-) AC100%pos 41013 (F+) WI1-855K3AC100%pos 25252 (R-) AC100%pos 41675 (F-) AC100%pos 2503 (R+) &WI1-900H20AC99.65%pos 5616 (R+) AC100%pos 42220 (F-) AC99.85%pos 5616 (R+) AC100%pos 42220 (F-) AC99.65%pos 22139 (R-) &AC99.85%pos 22139 (R-) &WI1-912B1&AC99.84%pos 151788 (F+) WI1-965A16AC100%pos 159191 (R-) AC99.8%pos 116699 (F+) WI1-982K6AC100%pos 5616 (R+) AC100%pos 42220 (F-) AC100%pos 5617 (R+) AC100%pos 42219 (F-) AC100%pos 22138 (R-) &AC100%pos 22139 (R-) &
RLTR31D_MM
Simple_repeat
Simple_repeat
Simple_repeat
RLTR17B_Mm
Simple_repeat
Simple_repeat
Simple_repeat
RMER20C_Mm
RLTR51A_Mm
RLTR31D_MM
hAT-Charlie
Low_complexity
Simple_repeat
Low_complexity
Simple_repeat
Simple_repeat
Simple_repeat
RLTR26C_MM
RLTR26C_MM
Low_complexity
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
hAT-Tip100
RLTR31D_MM
hAT-Charlie
RLTR20B3A_MM
Simple_repeat
RLTR51A_Mm
RLTR17B_Mm
MERVL_2A-int
MERVL_2A-int
MERVL_2A-int
RLTR17B_Mm
RLTR20C1_MM
RLTR17B_Mm
Simple_repeat
Simple_repeat
Simple_repeat
ORR1A4-int
ORR1A4-int
Low_complexity
hAT-Charlie
Low_complexity
Simple_repeat
Simple_repeat
Simple_repeat
Low_complexity
Simple_repeat
Simple_repeat
Simple_repeat
Low_complexity
RLTR17B_Mm
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
hAT-Charlie
Low_complexity
RLTR31D_MM
Simple_repeat
RLTR31D_MM
hAT-Charlie
hAT-Charlie
RLTR17B_Mm
TcMar-Tigger
Simple_repeat
Simple_repeat
Simple_repeat
Low_complexity
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
hAT-Charlie
hAT-Charlie
Low_complexity
RLTR16B_MM
TcMar-Tigger
hAT-Charlie
hAT-Blackjack
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
TcMar-Tigger
TcMar-Tigger
TcMar-Tigger
TcMar-Tigger
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
hAT-Charlie
ERV3-16A3_LTR
MLTR31C_MM
RLTR20C1_MM
RLTR20B3A_MM
RLTR20B3A_MM
RLTR20B3A_MM
RLTR17B_Mm
RLTR26C_MM
RLTR26C_MM
RLTR51A_Mm
RLTR26D_MM
RLTR31D_MM
RLTR31D_MM
RLTR31D_MM
hAT-Tip100
RMER20C_Mm
polypyrimidine
polypyrimidine
ERV3-16A3_I-int

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